Index

A

adata (Aggregation attribute) (HiVis attribute) add_annotations() (HiVis method)

add_mask() (HiVis method) agg (HiVis attribute) agg_cells() (HiVis method) agg_from_annotations() (HiVis method)

C

cells() (PlotAgg method) columns (Aggregation attribute) (HiVis attribute) combine() (Aggregation method) (HiVis method) compute_distances() (AnalysisAgg method) (AnalysisVisium method)

copy() (Aggregation method) (HiVis method) cor() (AnalysisAgg method) (AnalysisVisium method) (PlotAgg method) (PlotVisium method)

D

dge() (AnalysisAgg method) (AnalysisVisium method)

E

export_h5() (Aggregation method) (HiVis method)

export_images() (HiVis method) export_to_matlab() (Aggregation method)

F

fluorescence (HiVis attribute)

H

head() (Aggregation method) (HiVis method)

hist() (PlotAgg method) (PlotVisium method)

I

image_fullres (HiVis attribute)

import_geometry() (Aggregation method)

J

json (HiVis attribute)

L

load() (in module HiVis.HiVis)

M

merge() (Aggregation method)

N

name (Aggregation attribute) (HiVis attribute) new_merfish() (in module HiVis.HiVis) new_stereoseq() (in module HiVis.HiVis) new_visiumHD() (in module HiVis.HiVis)

new_xenium() (in module HiVis.HiVis) noise_mean_curve() (AnalysisAgg method) (AnalysisVisium method) (PlotAgg method) (PlotVisium method)

P

path_output (Aggregation attribute) (HiVis attribute)

properties (HiVis attribute) pseudobulk() (AnalysisAgg method) (AnalysisVisium method)

Q

qc() (AnalysisVisium method)

R

recolor() (HiVis method)

rename() (Aggregation method) (HiVis method)

S

save() (HiVis method) (PlotAgg method) (PlotVisium method) score_genes() (AnalysisAgg method) (AnalysisVisium method) shape (Aggregation attribute) (HiVis attribute)

smooth() (AnalysisAgg method) (AnalysisVisium method) spatial() (PlotAgg method) (PlotVisium method) sync() (Aggregation method)

U

umap() (PlotAgg method) update() (Aggregation method) (HiVis method)

update_meta() (HiVis method)

V

viz (Aggregation attribute)